Downloads

TmAlphaFold database currently provides validation of predicted transmembrane protein structures for the organisms listed below.

You can download various files about the prediction for an individual UniProt accession by visiting the corresponding structure page (example: https://tmalphafold.ttk.hu/entry/P33527).

For downloading all predictions for a given species, use the download links below. Note that this option is only available on the desktop version of the site. The compressed files contain four files for each entry:

.pdb.gz

Pdb file containing the rotated structure, so the protein is rotated in a way that the normal vector of membrane plane is the Z axis (the XY plane is parallel to the membrane plane).

_tmdet.xml

XML file containing the tmdet result, including the transformation matrix, together with the regions determined by the TMDET algorithm, using the following notations: “M” is for segments embedding in the membrane, “G” is for non-TM residues, “F” for residues erroneously harboring the membrane and “m” for segments erroneously placed outside the membrane bilayer.

_cctop.xml

XML file containing the topology prediction result by CCTOP.

_eval.xml

XML file containing the results of evaluation tests.

Compressed files for membrane localisations and evaluations of AlphaFold predicted transmembrane protein structures for model organism proteomes:

Compressed files for membrane localisations and evaluations of AlphaFold predicted transmembrane protein structures for global health proteomes:

Compressed files for membrane localisations and evaluations of AlphaFold predicted transmembrane protein structures for SwissProt entries: